G1

Atlantis Arise

Megatron teams up with the Sub-Atlanticans to take over Washington DC in an episode that John and Paul watched and recorded together for the first time.
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The Autobot Run

When the Autobots take part in a race for charity, Megatron traps most of them in their vehicular forms. Wheeljack invents something that saves the day.
 
R.I.P. Burt Reynolds
 
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The Immobilizer

Wheeljack comes up with another invention nobody asked for; This one freezes anything in place. Megatron attempts to use the invention for his own evil purposes, but an underdeveloped female character shows up and saves the day.
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Traitor

Cliffjumper is kind of a jerk and Mirage has kind of a stupid plan and, in the end, everything kind of works out.
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Attack Of The Autobots

Megatron's latest plan causes most of the Autobots to become evil. Through the power of love, and Wheeljack's "science", the remaining Autobots save the day.
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City Of Steel

When Megatron begins to turn New York into New Cybertron, the Autobots travel there to stop him. Also, Devestator is King Kong.
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Changing Gears

Gears is abducted by the Decepticons and turned into a giddy slave in Megatron's attempt to harness the sun's energy. Then the Autobots save him and the sun.
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Autobot Spike

In the first episode of season two, Spike is injured so bad that his consciousness must be temporarily housed in an Autobot body that his father built. It doesn't go well.
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Transformers: Season One Wrap-up: Part II

More talk about favourite and least favourite things from season one of The Trasformers.
Paul and John are also on Twitter.

Transformers: Season One Wrap-up: Part I

Paul and John share memories of Transformers toys, and talk about the best and worst of season one.
Paul and John are also on Twitter.

Heavy Metal War

The Decepticons build the Constructicons who build a machine that makes Megatron powerful enough to defeat Optimus in a winner-takes-all fight.
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A Plague Of Insecticons

Aside from a new line of toys/Decepticons being revealed, not much happens in this episode.
Paul and John are also on Twitter.